Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T45_01386Helix-turn-helix domain protein. (68 aa)    
Predicted Functional Partners:
T45_01385
Phage integrase family protein; Belongs to the 'phage' integrase family.
 
   
 0.961
T45_01387
Hypothetical protein.
 
   
 0.860
T45_02005
Hypothetical protein.
 
   
 0.838
T45_05583
Phage integrase family protein.
 
   
 0.838
gltB_1
Glutamate synthase [NADPH] large chain.
    
  0.818
fruA
PTS system fructose-specific EIIABC component.
     
  0.811
T45_01988
Hypothetical protein.
 
   
 0.803
korA
2-oxoglutarate oxidoreductase subunit KorA.
     
 0.777
accA
Acetyl-coenzyme A carboxylase carboxyl.
  
  
  0.750
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.736
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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