Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01389FtsK/SpoIIIE family protein. (468 aa)    
Predicted Functional Partners:
T45_01388
Hypothetical protein.
       0.789
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
   
 
 0.663
T45_03443
Proteins of 100 residues with WXG; Belongs to the WXG100 family.
   
 
 0.642
snm
Hypothetical protein.
  
 
 0.621
T45_01387
Hypothetical protein.
 
   
 0.580
T45_02488
SMI1 / KNR4 family protein.
   
 
 0.579
T45_07317
Proteins of 100 residues with WXG; Belongs to the WXG100 family.
   
 
 0.579
T45_01390
Hypothetical protein.
       0.527
T45_01385
Phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.492
T45_01386
Helix-turn-helix domain protein.
 
   
 0.459
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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