Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01438RNA polymerase sigma factor. (382 aa)    
Predicted Functional Partners:
T45_01439
Hypothetical protein.
 
     0.861
T45_08983
Hypothetical protein.
  
     0.717
T45_04201
55.5 kDa and 49.5 kDa sporulation proteins.
  
     0.696
T45_04363
Acyltransferase family protein.
  
   
 0.696
T45_04014
Hypothetical protein.
  
     0.684
T45_00509
Hypothetical protein.
  
 
   0.683
T45_02460
PQQ enzyme repeat protein.
  
     0.680
T45_00090
Putative peptidoglycan binding domain protein.
  
     0.670
T45_07263
Acyltransferase family protein.
  
   
 0.668
T45_00349
Tetratricopeptide repeat protein.
  
     0.667
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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