Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_0148955.5 kDa and 49.5 kDa sporulation proteins. (444 aa)    
Predicted Functional Partners:
T45_06651
Hypothetical protein.
  
     0.670
T45_02195
Hypothetical protein.
  
     0.577
T45_07616
Hypothetical protein.
  
    0.573
T45_03051
Helix-turn-helix protein.
  
     0.567
T45_05850
Helix-turn-helix protein.
  
     0.564
T45_04276
Hypothetical protein.
  
     0.537
T45_04157
Hypothetical protein.
  
     0.524
T45_06197
Hypothetical protein.
  
     0.519
T45_08981
Helix-turn-helix protein.
  
     0.518
T45_06322
Hypothetical protein.
  
     0.504
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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