Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01499Hypothetical protein. (319 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase.
 
  
 0.954
T45_02174
Flagellar basal body rod modification protein.
  
  
 0.780
T45_02375
Hypothetical protein.
  
  
 0.780
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
  
 0.745
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.718
T45_07296
Hypothetical protein.
 
  
 0.694
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
  
  
 0.658
T45_00193
Hypothetical protein.
  
     0.653
T45_01856
Hypothetical protein.
 
  
 0.616
T45_08590
Hypothetical protein.
 
  
 0.608
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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