Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epsJ_1Putative glycosyltransferase EpsJ. (328 aa)    
Predicted Functional Partners:
T45_01521
Hypothetical protein.
 
     0.949
T45_01525
Hypothetical protein.
 
   
 0.802
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate.
 
   
 0.794
T45_01523
Hypothetical protein.
 
     0.786
T45_01528
Hypothetical protein.
 
     0.689
epsJ_3
Putative glycosyltransferase EpsJ.
  
  
 
0.679
legI
N,N'-diacetyllegionaminic acid synthase.
 
  
 0.651
txtB
Thaxtomin synthase B.
  
 
 0.642
txtA
Thaxtomin synthase A.
  
 
 0.642
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.633
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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