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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdsC3-deoxy-D-manno-octulosonate 8-phosphate. (444 aa)    
Predicted Functional Partners:
legI
N,N'-diacetyllegionaminic acid synthase.
 
 0.999
T45_01525
Hypothetical protein.
 
   
 0.981
T45_01528
Hypothetical protein.
 
   
 0.978
T45_01523
Hypothetical protein.
 
     0.885
epsJ_2
Putative glycosyltransferase EpsJ.
 
  
 0.878
T45_01521
Hypothetical protein.
 
     0.819
epsJ_1
Putative glycosyltransferase EpsJ.
 
  
 0.793
wbpI
UDP-2,3-diacetamido-2,3-dideoxy-D-glucuronate; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.785
epsL
Putative sugar transferase EpsL.
  
  
 0.752
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.752
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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