Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cddCytidine deaminase. (130 aa)    
Predicted Functional Partners:
pdp
Pyrimidine-nucleoside phosphorylase.
 
 0.997
udp
Uridine phosphorylase.
  
 
 0.948
tdk
Thymidine kinase.
 
  
 0.945
ytfT_2
Inner membrane ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.910
T45_01536
Branched-chain amino acid transport system; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.902
T45_04114
Uridine kinase.
    
 0.891
T45_00337
Bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein.
 
  
  0.883
rihA
Pyrimidine-specific ribonucleoside hydrolase rihA.
   
 0.879
T45_01553
Uridine/cytidine kinase.
 
  
 0.879
yhcR
Endonuclease YhcR precursor; Belongs to the 5'-nucleotidase family.
    
 0.867
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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