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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigGECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (350 aa)    
Predicted Functional Partners:
sigL_2
ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.589
sigL_1
ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.578
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.561
ynfM
Inner membrane transport protein YnfM.
       0.550
gltC_1
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
       0.550
rpoB_1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.548
T45_06964
Hypothetical protein.
   
 
 0.531
sigD_4
ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.516
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.500
rsrA
Anti-sigma factor RsrA.
  
   0.492
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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