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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutH_1Histidine ammonia-lyase. (549 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 0.999
hutI_2
Imidazolonepropionase.
 
  
 0.967
hutH_3
Histidine ammonia-lyase.
  
  
 
0.920
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.907
dhbF_8
Dimodular nonribosomal peptide synthase.
    
 0.887
cph2_1
Phytochrome-like protein cph2.
  
    0.884
hutH_2
Histidine ammonia-lyase.
  
  
 
0.844
lgrD_2
Linear gramicidin synthase subunit D.
    
  0.794
paaF_1
2,3-dehydroadipyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.759
hpsN
Sulfopropanediol 3-dehydrogenase; Belongs to the histidinol dehydrogenase family.
    
 0.754
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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