Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ygbNInner membrane permease YgbN. (483 aa)    
Predicted Functional Partners:
T45_01628
Hypothetical protein.
       0.617
fruA
PTS system fructose-specific EIIABC component.
     
 0.610
garK
Glycerate 2-kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.596
kdgK_3
2-dehydro-3-deoxygluconokinase.
 
  
 0.577
xylB_4
Xylulose kinase; Belongs to the FGGY kinase family.
 
  
 0.525
kdgR_2
Transcriptional regulator KdgR.
       0.520
yabJ_1
Enamine/imine deaminase.
       0.520
gntK
Thermoresistant gluconokinase.
 
  
 0.498
T45_01623
D-threonine aldolase.
  
    0.443
vgb_2
Virginiamycin B lyase.
  
  
 0.434
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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