Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T45_01656Bacterial type II secretion system protein F domain protein. (313 aa)    
Predicted Functional Partners:
minD
Septum site-determining protein MinD.
 
 
 0.997
T45_01657
Bacterial type II secretion system protein F domain protein.
 
 
0.996
T45_01655
Putative conjugal transfer protein/MT3759.
 
 
 0.995
cpaB
Hypothetical protein.
 
 
 0.992
T45_00764
Putative conjugal transfer protein/MT3759.
 
 
 0.983
T45_07294
Putative conjugal transfer protein/MT3759.
 
 
 0.981
T45_00762
Bacterial type II secretion system protein F domain protein.
  
  
  0.883
T45_00763
Bacterial type II secretion system protein F domain protein.
     
  0.850
narX_2
Nitrate/nitrite sensor protein NarX.
       0.848
degU_2
Transcriptional regulatory protein DegU.
       0.845
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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