STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_01656Bacterial type II secretion system protein F domain protein. (313 aa)    
Predicted Functional Partners:
minD
Septum site-determining protein MinD.
 
  
 0.985
T45_01657
Bacterial type II secretion system protein F domain protein.
 
  
0.980
T45_01655
Putative conjugal transfer protein/MT3759.
 
  
 0.973
cpaB
Hypothetical protein.
 
  
 0.955
T45_07294
Putative conjugal transfer protein/MT3759.
 
  
 0.892
T45_00764
Putative conjugal transfer protein/MT3759.
 
  
 0.891
narX_2
Nitrate/nitrite sensor protein NarX.
       0.860
degU_2
Transcriptional regulatory protein DegU.
       0.858
T45_01654
TadE-like protein.
  
  
 0.829
arfA
Peptidoglycan-binding protein ArfA.
 
     0.730
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.