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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smc_2Chromosome partition protein Smc. (447 aa)    
Predicted Functional Partners:
T45_01664
Hypothetical protein.
       0.869
T45_02460
PQQ enzyme repeat protein.
  
     0.752
T45_01666
Hypothetical protein.
       0.740
T45_02914
Hypothetical protein.
  
   0.736
T45_01620
Glucan endo-1,3-beta-glucosidase precursor.
  
     0.734
xlnA_10
Endo-1,4-beta-xylanase A precursor.
  
    0.733
T45_00349
Tetratricopeptide repeat protein.
  
     0.729
ssrA
Glucan endo-1,3-beta-glucosidase precursor.
  
     0.729
T45_08938
Hypothetical protein.
 
     0.728
T45_02375
Hypothetical protein.
  
     0.727
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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