Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01676Hypothetical protein. (231 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase.
    
 0.863
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 0.848
yrrB
TPR repeat-containing protein YrrB.
  
 0.815
ftsX
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.798
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
   
 
 0.770
lytC
N-acetylmuramoyl-L-alanine amidase LytC.
   
 
 0.719
T45_04083
Tetratricopeptide repeat protein.
   
   0.672
T45_01591
Hypothetical protein.
   
   0.574
T45_01593
Hypothetical protein.
   
   0.574
T45_02245
Hypothetical protein.
   
   0.574
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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