Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
T45_01686Transcriptional regulator PadR-like family protein. (189 aa)    
Predicted Functional Partners:
T45_01684
FtsX-like permease family protein.
 
   
 0.962
lolD_4
Lipoprotein-releasing system ATP-binding protein.
 
     0.888
cbiX_2
Sirohydrochlorin cobaltochelatase.
   
    0.794
T45_01687
Hypothetical protein.
       0.551
T45_00649
Hypothetical protein.
 
     0.538
T45_01688
SPFH domain / Band 7 family protein.
       0.521
T45_03203
Hypothetical protein.
  
     0.519
T45_02069
Hypothetical protein.
  
     0.439
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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