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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speG_1Spermidine N(1)-acetyltransferase. (192 aa)    
Predicted Functional Partners:
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.691
T45_01750
Hypothetical protein.
  
    0.680
gltB_1
Glutamate synthase [NADPH] large chain.
   
 
 0.665
speG_3
Spermidine N(1)-acetyltransferase.
  
     0.635
ydaF_6
Putative ribosomal N-acetyltransferase YdaF.
  
     0.630
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
  0.614
ydaF_3
Putative ribosomal N-acetyltransferase YdaF.
  
     0.609
T45_06128
anhydro-N-acetylmuramic acid kinase.
  
     0.595
ydaF_2
Putative ribosomal N-acetyltransferase YdaF.
  
     0.572
T45_04943
anhydro-N-acetylmuramic acid kinase.
  
     0.532
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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