Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycf3Photosystem I assembly protein Ycf3. (599 aa)    
Predicted Functional Partners:
T45_07987
Hypothetical protein.
  
 
   0.767
T45_09072
Sensory histidine kinase AtoS.
 
 
 0.748
T45_09231
Hypothetical protein.
  
 
   0.727
T45_02489
Hypothetical protein.
  
     0.713
T45_01411
Sensory histidine kinase AtoS.
  
 
 0.709
T45_08150
Hypothetical protein.
  
 
   0.706
T45_05783
Hypothetical protein.
  
     0.694
T45_07567
Hypothetical protein.
  
     0.693
T45_01841
Hypothetical protein.
       0.691
T45_06754
Peptidase family M48.
  
 
  0.684
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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