Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cyc1Epi-isozizaene synthase. (337 aa)    
Predicted Functional Partners:
T45_01866
Epi-isozizaene.
 
  
 0.993
cyc2
Germacradienol/geosmin synthase.
  
  
0.907
gltB_1
Glutamate synthase [NADPH] large chain.
    
 0.895
T45_01893
(2E,6E)-farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.881
T45_05613
(2E,6E)-farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.871
T45_03629
(2E,6E)-farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.870
ptlI
Pentalenene oxygenase; Belongs to the cytochrome P450 family.
    
 0.862
uppS_1
Trans,polycis-polyprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.850
uppS_2
(2Z,6E)-farnesyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.850
T45_06421
(2E,6E)-farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
     
 0.850
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.