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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_01869Transglutaminase-activating metalloprotease. (688 aa)    
Predicted Functional Partners:
cysM
O-phosphoserine sulfhydrylase.
       0.548
cysO_1
Sulfur carrier protein CysO.
       0.545
T45_00744
Glucan endo-1,3-beta-glucosidase precursor.
  
  
  0.524
T45_01165
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.502
T45_06646
Hypothetical protein.
  
  
  0.496
T45_04431
Hypothetical protein.
  
     0.477
nrdB
Ribonucleoside-diphosphate reductase subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
       0.464
nrdZ
Ribonucleoside-diphosphate reductase NrdZ; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
       0.464
T45_05303
Hypothetical protein.
 
     0.460
T45_04720
poly(beta-D-mannuronate lyase.
  
     0.455
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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