Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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yodF_1Putative symporter YodF; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (536 aa)    
Predicted Functional Partners:
T45_01873
Hypothetical protein.
 
   
 0.951
barA_2
Signal transduction histidine-protein kinase.
    
 0.866
T45_07024
Hypothetical protein.
 
   
 0.740
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 0.614
T45_09072
Sensory histidine kinase AtoS.
  
 
 0.574
dasR_1
HTH-type transcriptional repressor DasR.
       0.559
ydjE
Inner membrane metabolite transport protein.
  
     0.551
fadM_2
Proline dehydrogenase 1.
  
  
 0.522
yveA_2
Aspartate-proton symporter.
  
   
 0.503
T45_01411
Sensory histidine kinase AtoS.
   
 
 0.502
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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