Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybbD_1Putative lipoprotein YbbD precursor. (499 aa)    
Predicted Functional Partners:
pbpE_3
Penicillin-binding protein 4*.
 
    0.922
ybbD_3
Putative lipoprotein YbbD precursor; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.882
ybbD_2
Putative lipoprotein YbbD precursor.
  
  
 
0.871
strH
beta-N-acetylhexosaminidase precursor.
 
  
  0.869
ycjO_1
Inner membrane ABC transporter permease protein.
     
 0.868
sugB_1
Trehalose transport system permease protein.
       0.868
chtA
Chitinase 63 precursor; Belongs to the glycosyl hydrolase 18 family.
     
 0.863
chiC
Chitinase C precursor.
     
 0.858
exo
Beta-hexosaminidase.
    
  0.852
T45_05033
beta-N-acetylhexosaminidase.
    
  0.852
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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