Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sigF_1RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family. (375 aa)    
Predicted Functional Partners:
rsbW
Serine-protein kinase RsbW.
 
 
 0.985
rsbU_4
Phosphoserine phosphatase RsbU.
 
 
 0.800
rsbP_4
Phosphoserine phosphatase RsbP.
 
 
 0.797
rsbU_13
Phosphoserine phosphatase RsbU.
 
 
 0.794
rsbU_7
Phosphoserine phosphatase RsbU.
 
 
 0.791
rsbU_19
Phosphoserine phosphatase RsbU.
 
 
 0.791
rsbU_17
Phosphoserine phosphatase RsbU.
 
 
 0.790
rsbU_15
Phosphoserine phosphatase RsbU.
 
 
 0.787
rpoB_1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.772
yegE
Putative diguanylate cyclase YegE.
 
 
 0.772
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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