STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcyDD-cysteine desulfhydrase. (289 aa)    
Predicted Functional Partners:
korA
2-oxoglutarate oxidoreductase subunit KorA.
     
  0.780
acoA
Acetoin:2,6-dichlorophenolindophenol.
     
  0.740
T45_01890
N-acetylmuramoyl-L-alanine amidase.
       0.735
patB
Cystathionine beta-lyase PatB.
    
  0.730
sseA
3-mercaptopyruvate sulfurtransferase.
     
 0.719
T45_06008
Putative thiosulfate sulfurtransferase.
     
 0.719
pflB
Formate acetyltransferase.
     
  0.715
gadB
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
     
  0.715
T45_01893
(2E,6E)-farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
     0.663
T45_01891
Hypothetical protein.
       0.646
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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