Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_01896YCII-related domain protein. (141 aa)    
Predicted Functional Partners:
T45_01895
Hypothetical protein.
       0.805
T45_07383
RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
     0.788
sigI
Putative ECF RNA polymerase sigma factor SigI; Belongs to the sigma-70 factor family.
 
     0.777
T45_07384
YCII-related domain protein.
  
     0.767
T45_05231
YCII-related domain protein.
  
     0.742
T45_01897
Hypothetical protein.
       0.714
T45_01898
Hypothetical protein.
       0.668
mshD_2
Mycothiol acetyltransferase.
       0.558
T45_07986
Glyoxalase-like domain protein.
 
    0.508
T45_08040
Glyoxalase-like domain protein.
 
     0.491
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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