T45_01907 protein (Streptomyces turgidiscabies)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T45_01907

Hypothetical protein. (229 aa)

Predicted Functional Partners:

dhbF_8

0.832

mlr_1

0.740

lgrD_2

0.632

lgrB

0.607

txtB

0.607

txtA

0.607

gcvP

0.600

pks2

0.548

ppsE_1

0.546

T45_02270

0.515

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_01907	T45_02270	T45_01907	T45_02270	Hypothetical protein.	Saccharopine dehydrogenase.	0.515
T45_01907	dhbF_8	T45_01907	T45_05484	Hypothetical protein.	Dimodular nonribosomal peptide synthase.	0.832
T45_01907	gcvP	T45_01907	T45_09295	Hypothetical protein.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.600
T45_01907	lgrB	T45_01907	T45_02352	Hypothetical protein.	Linear gramicidin synthase subunit B.	0.607
T45_01907	lgrD_2	T45_01907	T45_05481	Hypothetical protein.	Linear gramicidin synthase subunit D.	0.632
T45_01907	mlr_1	T45_01907	T45_00712	Hypothetical protein.	4-methylaminobutanoate oxidase; Belongs to the GcvT family.	0.740
T45_01907	pks2	T45_01907	T45_01967	Hypothetical protein.	Phthioceranic/hydroxyphthioceranic acid.	0.548
T45_01907	ppsE_1	T45_01907	T45_02351	Hypothetical protein.	Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.	0.546
T45_01907	txtA	T45_01907	T45_09185	Hypothetical protein.	Thaxtomin synthase A.	0.607
T45_01907	txtB	T45_01907	T45_09184	Hypothetical protein.	Thaxtomin synthase B.	0.607
T45_02270	T45_01907	T45_02270	T45_01907	Saccharopine dehydrogenase.	Hypothetical protein.	0.515
dhbF_8	T45_01907	T45_05484	T45_01907	Dimodular nonribosomal peptide synthase.	Hypothetical protein.	0.832
dhbF_8	lgrB	T45_05484	T45_02352	Dimodular nonribosomal peptide synthase.	Linear gramicidin synthase subunit B.	0.999
dhbF_8	lgrD_2	T45_05484	T45_05481	Dimodular nonribosomal peptide synthase.	Linear gramicidin synthase subunit D.	0.999
dhbF_8	mlr_1	T45_05484	T45_00712	Dimodular nonribosomal peptide synthase.	4-methylaminobutanoate oxidase; Belongs to the GcvT family.	0.895
dhbF_8	pks2	T45_05484	T45_01967	Dimodular nonribosomal peptide synthase.	Phthioceranic/hydroxyphthioceranic acid.	0.999
dhbF_8	ppsE_1	T45_05484	T45_02351	Dimodular nonribosomal peptide synthase.	Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.	0.999
dhbF_8	txtA	T45_05484	T45_09185	Dimodular nonribosomal peptide synthase.	Thaxtomin synthase A.	0.999
dhbF_8	txtB	T45_05484	T45_09184	Dimodular nonribosomal peptide synthase.	Thaxtomin synthase B.	0.999
gcvP	T45_01907	T45_09295	T45_01907	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Hypothetical protein.	0.600