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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiCChitinase C precursor. (609 aa)    
Predicted Functional Partners:
strH
beta-N-acetylhexosaminidase precursor.
 
  
 0.968
chiA2_2
Chitinase precursor.
 
0.966
ybbD_2
Putative lipoprotein YbbD precursor.
   
 
 0.943
exo
Beta-hexosaminidase.
 
  
 0.933
T45_05033
beta-N-acetylhexosaminidase.
 
  
 0.922
chiA
Putative bifunctional chitinase/lysozyme.
 
 0.907
ybbD_1
Putative lipoprotein YbbD precursor.
   
 
 0.903
chtA
Chitinase 63 precursor; Belongs to the glycosyl hydrolase 18 family.
 
  
 
0.896
ybbD_3
Putative lipoprotein YbbD precursor; Belongs to the glycosyl hydrolase 3 family.
   
 
 0.894
ctaE
Cytochrome c oxidase subunit 3.
    
 0.888
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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