STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mhqR_4HTH-type transcriptional regulator MhqR. (169 aa)    
Predicted Functional Partners:
cobB_2
NAD-dependent protein deacetylase.
   
    0.854
yvhJ_3
Putative transcriptional regulator YvhJ.
   
    0.842
T45_09248
MarR family protein.
   
    0.793
T45_02066
Hypothetical protein.
       0.787
T45_02063
Hypothetical protein.
       0.781
T45_02064
Hypothetical protein.
       0.781
cdhR_4
HTH-type transcriptional regulator CdhR.
   
    0.750
cdhR_8
HTH-type transcriptional regulator CdhR.
   
    0.750
mexR
Multidrug resistance operon repressor.
 
   
0.733
yodB_2
HTH-type transcriptional regulator YodB.
   
    0.729
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.