Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dcuS_1Sensor histidine kinase DcuS. (601 aa)    
Predicted Functional Partners:
dcuR
Transcriptional regulatory protein DcuR.
 
 0.990
citT_1
Transcriptional regulatory protein CitT.
 
 0.951
citT_2
Transcriptional regulatory protein CitT.
 
 0.951
barA_2
Signal transduction histidine-protein kinase.
   
 0.902
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 0.847
dctA_1
Aerobic C4-dicarboxylate transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.835
glcK_1
Glucokinase.
  
 0.773
lytR
Sensory transduction protein LytR.
 
  
 0.667
T45_09072
Sensory histidine kinase AtoS.
   
 
 0.652
rsbP_1
Phosphoserine phosphatase RsbP.
    
 0.588
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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