Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
vapC5Ribonuclease VapC5. (142 aa)    
Predicted Functional Partners:
vapB5
Putative antitoxin VapB5; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.994
T45_00731
Hypothetical protein.
  
   0.635
T45_00815
Antitoxin VapB21.
  
   0.635
T45_06125
Antitoxin VapB11.
  
   0.635
T45_09109
Hypothetical protein.
  
   0.635
T45_01518
Phd_YefM.
   
 
 0.605
yhjX_1
Putative MFS-type transporter YhjX.
       0.590
T45_02229
Hypothetical protein.
  
     0.456
T45_02582
Hypothetical protein.
  
     0.454
cdhR_2
HTH-type transcriptional regulator CdhR.
       0.434
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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