czcO_1 protein (Streptomyces turgidiscabies)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

czcO_1

Putative oxidoreductase CzcO. (391 aa)

Predicted Functional Partners:

paaG_2

0.757

T45_02148

0.732

ydaF_1

0.684

T45_02152

0.662

namA

0.662

fadH

0.639

T45_08491

0.636

atpC

0.597

atpB

0.592

atpA

0.592

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_02148	T45_02152	T45_02148	T45_02152	Hypothetical protein.	Hypothetical protein.	0.756
T45_02148	czcO_1	T45_02148	T45_02149	Hypothetical protein.	Putative oxidoreductase CzcO.	0.732
T45_02148	paaG_2	T45_02148	T45_02147	Hypothetical protein.	1,2-epoxyphenylacetyl-CoA isomerase.	0.848
T45_02152	T45_02148	T45_02152	T45_02148	Hypothetical protein.	Hypothetical protein.	0.756
T45_02152	czcO_1	T45_02152	T45_02149	Hypothetical protein.	Putative oxidoreductase CzcO.	0.662
T45_02152	paaG_2	T45_02152	T45_02147	Hypothetical protein.	1,2-epoxyphenylacetyl-CoA isomerase.	0.613
T45_02152	ydaF_1	T45_02152	T45_02153	Hypothetical protein.	Putative ribosomal N-acetyltransferase YdaF.	0.873
T45_08491	atpA	T45_08491	T45_02028	NADH oxidase.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.679
T45_08491	czcO_1	T45_08491	T45_02149	NADH oxidase.	Putative oxidoreductase CzcO.	0.636
T45_08491	fadH	T45_08491	T45_07838	NADH oxidase.	2,4-dienoyl-CoA reductase [NADPH].	0.871
T45_08491	namA	T45_08491	T45_02882	NADH oxidase.	NADPH dehydrogenase.	0.573
atpA	T45_08491	T45_02028	T45_08491	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	NADH oxidase.	0.679
atpA	atpB	T45_02028	T45_02024	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	0.999
atpA	atpC	T45_02028	T45_02031	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atpA	czcO_1	T45_02028	T45_02149	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	Putative oxidoreductase CzcO.	0.592
atpB	atpA	T45_02024	T45_02028	ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.999
atpB	atpC	T45_02024	T45_02031	ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atpB	czcO_1	T45_02024	T45_02149	ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	Putative oxidoreductase CzcO.	0.592
atpC	atpA	T45_02031	T45_02028	ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.999
atpC	atpB	T45_02031	T45_02024	ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	0.999