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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_02188Hypothetical protein. (138 aa)    
Predicted Functional Partners:
T45_01407
Hypothetical protein.
 
 
 0.997
T45_02189
Lipid-transfer protein.
 
  0.989
T45_01408
Lipid-transfer protein.
 
  0.953
fadI
3-ketoacyl-CoA thiolase.
 
  0.951
T45_05211
acetyl-CoA acetyltransferase.
 
  0.943
T45_08124
Lipid-transfer protein.
 
  0.943
T45_07036
Lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
  0.933
pcaF_2
beta-ketoadipyl-CoA thiolase.
 
 0.914
caiD_1
carnitinyl-CoA dehydratase.
    
  0.891
T45_05251
Lipid-transfer protein.
 
 
0.842
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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