STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
afsR_6Regulatory protein AfsR. (1007 aa)    
Predicted Functional Partners:
T45_02200
Amidohydrolase.
 
     0.591
gph_4
Phosphoglycolate phosphatase.
  
    0.580
T45_01314
Hypothetical protein.
  
     0.559
T45_03782
Lanthionine synthetase C-like protein.
  
 
   0.525
T45_03886
Transcriptional regulator PadR-like family protein.
  
    0.508
T45_08816
55.5 kDa and 49.5 kDa sporulation proteins.
  
    0.496
T45_05386
Hypothetical protein.
  
     0.494
T45_03327
55.5 kDa and 49.5 kDa sporulation proteins.
  
    0.483
T45_06898
N-acetylmuramoyl-L-alanine amidase.
  
     0.480
T45_06189
55.5 kDa and 49.5 kDa sporulation proteins.
  
    0.468
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.