Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_02200Amidohydrolase. (419 aa)    
Predicted Functional Partners:
dan_2
D-aminoacylase.
 
     0.727
T45_02944
Hypothetical protein.
  
     0.718
T45_05284
Hypothetical protein.
  
     0.704
T45_02117
Hypothetical protein.
  
     0.681
T45_02954
Hypothetical protein.
 
     0.679
subB_1
Ferredoxin-2.
  
     0.638
T45_05251
Lipid-transfer protein.
 
     0.631
limB_1
Limonene 1,2-monooxygenase.
 
     0.627
nfdA_4
N-substituted formamide deformylase precursor.
  
     0.603
T45_05252
Alpha/beta hydrolase family protein.
  
     0.602
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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