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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynCGlucuronoxylanase XynC precursor. (441 aa)    
Predicted Functional Partners:
csxA_3
exo-beta-D-glucosaminidase precursor.
  
     0.739
T45_05143
Cycloisomaltooligosaccharide glucanotransferase.
  
     0.733
abfB_5
Extracellular exo-alpha-L-arabinofuranosidase precursor; Belongs to the glycosyl hydrolase 43 family.
 
 
  0.700
T45_00264
Hypothetical protein.
 
   
 0.697
abfB_3
Extracellular exo-alpha-L-arabinofuranosidase precursor; Belongs to the glycosyl hydrolase 43 family.
 
 
  0.694
xlnA_8
Endo-1,4-beta-xylanase A precursor.
  
     0.667
T45_06518
Hypothetical protein.
 
 
  0.661
T45_07017
Carbohydrate binding module (family 6.
  
     0.648
T45_06979
Alpha-glucosidase.
  
     0.644
T45_05086
alpha-L-arabinofuranosidase B (ABFB.
 
  0.631
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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