Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
msbA_1Lipid A export ATP-binding/permease protein. (664 aa)    
Predicted Functional Partners:
ftsH_1
ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.
  
 
  0.701
dnaK_1
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.698
dnaK_2
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.686
pks2
Phthioceranic/hydroxyphthioceranic acid.
   
 0.663
ppsE_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.
    
 0.653
cydD
ATP-binding/permease protein CydD.
  
 
  0.652
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 0.644
acuC
Acetoin utilization protein AcuC.
   
  0.640
T45_03536
ATPase family associated with various cellular activities.
  
 
  0.632
lagD
lactococcin-G-processing and transport.
   
  0.619
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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