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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_02260Hypothetical protein. (499 aa)    
Predicted Functional Partners:
T45_01607
Hypothetical protein.
   
 0.966
chtA
Chitinase 63 precursor; Belongs to the glycosyl hydrolase 18 family.
  
 
 0.690
xynAS9_4
Endo-1,4-beta-xylanase A precursor.
  
 
 0.620
T45_04363
Acyltransferase family protein.
    
 0.617
pgaC_1
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
    
 0.617
T45_07263
Acyltransferase family protein.
    
 0.617
icaA
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
    
 0.617
amy
Alpha-amylase precursor; Belongs to the glycosyl hydrolase 13 family.
    
 0.581
T45_00277
Hypothetical protein.
    
  0.458
T45_00365
Hypothetical protein.
    
  0.458
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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