Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pksJPolyketide synthase PksJ. (471 aa)    
Predicted Functional Partners:
lgrD_2
Linear gramicidin synthase subunit D.
 0.999
dhbF_8
Dimodular nonribosomal peptide synthase.
 
0.999
ppsE_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.
 0.997
T45_06353
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
 0.994
cmdD_1
Chondramide synthase cmdD.
 
0.992
ppsA
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
 
 0.991
pks2
Phthioceranic/hydroxyphthioceranic acid.
 
 0.987
T45_03126
long-chain-fatty-acid--AMP ligase FadD26.
 0.985
T45_06351
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
 0.985
dhbF_5
Dimodular nonribosomal peptide synthase.
 
0.982
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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