close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligB_2LigB family dioxygenase. (263 aa)    
Predicted Functional Partners:
T45_02378
Putative HTH-type transcriptional.
    
 0.856
T45_02375
Hypothetical protein.
     
 0.686
T45_04622
stearoyl-CoA 9-desaturase electron transfer.
     
 0.648
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
     
 0.648
hmp_4
3-ketosteroid-9-alpha-hydroxylase reductase.
     
 0.648
pobB
Phenoxybenzoate dioxygenase subunit beta.
     
 0.648
pht2
Phthalate 4,5-dioxygenase oxygenase reductase.
     
 0.648
metG_2
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.597
yhhW_3
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.532
T45_08773
Hypothetical protein.
  
  
 0.467
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.