Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ligB_2LigB family dioxygenase. (263 aa)    
Predicted Functional Partners:
T45_02378
Putative HTH-type transcriptional.
     
 0.807
T45_04622
stearoyl-CoA 9-desaturase electron transfer.
     
 0.628
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
     
 0.628
hmp_4
3-ketosteroid-9-alpha-hydroxylase reductase.
     
 0.628
pobB
Phenoxybenzoate dioxygenase subunit beta.
     
 0.628
pht2
Phthalate 4,5-dioxygenase oxygenase reductase.
     
 0.628
metG_2
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.597
T45_02375
Hypothetical protein.
     
 0.588
yhhW_3
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.534
galD
4-oxalomesaconate tautomerase.
    
 0.510
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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