STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_02416Zinc-responsive transcriptional regulator. (206 aa)    
Predicted Functional Partners:
hapE_1
4-hydroxyacetophenone monooxygenase.
 
     0.901
rbtD
Ribitol 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.886
accA
Acetyl-coenzyme A carboxylase carboxyl.
   
  0.823
gltB_1
Glutamate synthase [NADPH] large chain.
    
 0.819
cpo_2
Non-heme chloroperoxidase.
 
     0.813
T45_08776
Putative metal-dependent hydrolase.
 
     0.790
sadH_1
Putative oxidoreductase SadH.
 
     0.662
rpoB_1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.643
cph2_2
Phytochrome-like protein cph2.
    
 0.628
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
    
 0.628
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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