Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydfJ_2Membrane protein YdfJ. (756 aa)    
Predicted Functional Partners:
dhbF_8
Dimodular nonribosomal peptide synthase.
 
 
 
 0.707
ybaK_1
Cys-tRNA(Pro/Cys)-tRNA(Cys) deacylase YbaK.
       0.519
T45_02422
Bacterial regulatory proteins, tetR family.
       0.514
T45_02427
EamA-like transporter family protein.
       0.503
T45_02424
Hypothetical protein.
       0.488
T45_02425
Hypothetical protein.
       0.488
lgrD_2
Linear gramicidin synthase subunit D.
   
 
 0.426
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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