ycfH protein (Streptomyces turgidiscabies) - STRING interaction network

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Score

ycfH

Putative deoxyribonuclease YcfH. (292 aa)

Predicted Functional Partners:

rpfB_1

0.847

metG_1

0.820

rsmA_2

0.812

T45_02444

0.737

ispE

0.709

rsmI

0.675

tsaD

0.570

ssb1

0.552

ssb2

0.536

rluD

0.535

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_02444	ispE	T45_02444	T45_02451	Hypothetical protein.	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	0.670
T45_02444	rpfB_1	T45_02444	T45_02446	Hypothetical protein.	Resuscitation-promoting factor RpfB precursor.	0.669
T45_02444	rsmA_2	T45_02444	T45_02450	Hypothetical protein.	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.622
T45_02444	rsmI	T45_02444	T45_02443	Hypothetical protein.	Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.722
T45_02444	ycfH	T45_02444	T45_02445	Hypothetical protein.	Putative deoxyribonuclease YcfH.	0.737
ispE	T45_02444	T45_02451	T45_02444	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	Hypothetical protein.	0.670
ispE	rpfB_1	T45_02451	T45_02446	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	Resuscitation-promoting factor RpfB precursor.	0.692
ispE	rsmA_2	T45_02451	T45_02450	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.988
ispE	rsmI	T45_02451	T45_02443	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.519
ispE	ycfH	T45_02451	T45_02445	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	Putative deoxyribonuclease YcfH.	0.709
metG_1	ycfH	T45_01198	T45_02445	methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	Putative deoxyribonuclease YcfH.	0.820
rluD	rsmA_2	T45_03998	T45_02450	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.476
rluD	rsmI	T45_03998	T45_02443	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.488
rluD	tsaD	T45_03998	T45_07400	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.513
rluD	ycfH	T45_03998	T45_02445	Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Putative deoxyribonuclease YcfH.	0.535
rpfB_1	T45_02444	T45_02446	T45_02444	Resuscitation-promoting factor RpfB precursor.	Hypothetical protein.	0.669
rpfB_1	ispE	T45_02446	T45_02451	Resuscitation-promoting factor RpfB precursor.	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	0.692
rpfB_1	rsmA_2	T45_02446	T45_02450	Resuscitation-promoting factor RpfB precursor.	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.939
rpfB_1	rsmI	T45_02446	T45_02443	Resuscitation-promoting factor RpfB precursor.	Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.	0.617
rpfB_1	ycfH	T45_02446	T45_02445	Resuscitation-promoting factor RpfB precursor.	Putative deoxyribonuclease YcfH.	0.847