Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tam_1Trans-aconitate 2-methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. (279 aa)    
Predicted Functional Partners:
T45_02474
Glyoxalase-like domain protein.
      0.970
dhbF_8
Dimodular nonribosomal peptide synthase.
    
 0.851
cmdD_1
Chondramide synthase cmdD.
    
 0.805
txtB
Thaxtomin synthase B.
    
 0.786
txtA
Thaxtomin synthase A.
    
 0.786
marR_2
Multiple antibiotic resistance protein MarR.
     
 0.740
ppsA
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA.
    
 0.630
lgrD_2
Linear gramicidin synthase subunit D.
    
 0.612
lgrB
Linear gramicidin synthase subunit B.
    
 0.609
dhbF_5
Dimodular nonribosomal peptide synthase.
    
  0.596
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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