Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bceA_1Bacitracin export ATP-binding protein BceA. (262 aa)    
Predicted Functional Partners:
macB_3
Macrolide export ATP-binding/permease protein.
 
  0.983
T45_06287
FtsX-like permease family protein.
  
 0.942
ytrF_3
ABC transporter permease YtrF precursor.
 
  0.932
macB_2
Macrolide export ATP-binding/permease protein.
 0.830
macB_5
Macrolide export ATP-binding/permease protein.
 
 
 0.804
macB_8
Macrolide export ATP-binding/permease protein.
 
 
 0.804
ytrF_2
ABC transporter permease YtrF precursor.
 
 
 0.801
macB_6
Macrolide export ATP-binding/permease protein.
 0.778
ytrF_1
ABC transporter permease YtrF precursor.
 
  0.760
T45_00819
FtsX-like permease family protein.
  
  0.659
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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