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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_02500Hypothetical protein. (236 aa)    
Predicted Functional Partners:
T45_05779
Hypothetical protein; Belongs to the UPF0109 family.
   
 
 0.966
prkC_5
Serine/threonine-protein kinase PrkC.
       0.884
rne
Ribonuclease E.
   
   0.772
T45_05054
Hypothetical protein.
   
   0.772
T45_02502
Hypothetical protein.
       0.750
yidC_1
Membrane protein insertase YidC.
  
  
 0.736
yidC_2
Membrane protein insertase YidC.
  
  
 0.736
T45_02499
Putative type I restriction enzymeP M protein.
       0.720
surA
Chaperone SurA.
       0.677
yidD
Putative membrane protein insertion efficiency; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.669
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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