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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobA_1P-hydroxybenzoate hydroxylase. (391 aa)    
Predicted Functional Partners:
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
 
 0.968
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
 
 0.967
ligA_1
Protocatechuate 4,5-dioxygenase alpha chain.
 
  
 0.886
clcA
Chlorocatechol 1,2-dioxygenase.
 
  
 0.811
ligB
Protocatechuate 4,5-dioxygenase beta chain.
 
  
 0.803
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.776
galD
4-oxalomesaconate tautomerase.
  
  
 0.749
catD_4
3-oxoadipate enol-lactonase 2.
 
  
 0.738
catD_2
3-oxoadipate enol-lactonase 2.
 
  
 0.734
bphC_2
Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase.
 
  
  0.719
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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