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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcaR_1Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
benM_1
HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family.
  
     0.744
yofA_2
HTH-type transcriptional regulator YofA; Belongs to the LysR transcriptional regulatory family.
  
     0.739
cmpR_1
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.705
gltC_8
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.671
T45_02538
Alcohol dehydrogenase.
       0.588
fadB2_1
3-hydroxybutyryl-CoA dehydrogenase.
       0.553
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
       0.550
catI
3-oxoadipate CoA-transferase subunit A.
       0.487
T45_02537
Carboxymuconolactone decarboxylase family.
       0.478
cysL
HTH-type transcriptional regulator CysL; Belongs to the LysR transcriptional regulatory family.
  
     0.460
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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