Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cycBCyclodextrin-binding protein precursor. (433 aa)    
Predicted Functional Partners:
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.986
lacF_4
Lactose transport system permease protein LacF.
 
  0.981
araQ_5
L-arabinose transport system permease protein.
 
  
  0.919
ycjO_5
Inner membrane ABC transporter permease protein.
  
  0.906
ycjO_2
Inner membrane ABC transporter permease protein.
 
  0.874
glcK_1
Glucokinase.
       0.805
T45_02552
Carboxylesterase; Belongs to the type-B carboxylesterase/lipase family.
       0.773
lacF_23
Lactose transport system permease protein LacF.
 
  0.773
T45_02554
Choline dehydrogenase.
       0.756
lacF_11
Lactose transport system permease protein LacF.
 
  0.756
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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