Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
efeB_2Deferrochelatase/peroxidase EfeB precursor. (400 aa)    
Predicted Functional Partners:
T45_00226
Efem/EfeO family lipoprotein precursor.
 
  
 0.959
T45_06268
Efem/EfeO family lipoprotein precursor.
 
  
 0.959
efeO
Iron uptake system component EfeO precursor.
 
  
 0.910
efeU
Ferrous iron permease EfeU.
 
  
 0.834
T45_02559
Hypothetical protein.
 
     0.804
T45_01366
Hypothetical protein.
  
  
 0.774
ycnJ_1
Copper transport protein YcnJ precursor.
  
  
 0.597
T45_07970
Copper resistance protein D.
  
  
 0.597
ycnJ_2
Copper transport protein YcnJ precursor.
  
  
 0.597
T45_00242
Hypothetical protein.
  
  
 0.501
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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