Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_02590VWA domain containing CoxE-like protein. (1213 aa)    
Predicted Functional Partners:
T45_02589
AAA domain.
 
 
 0.959
T45_02591
Hypothetical protein.
       0.873
bchI
Magnesium-chelatase 38 kDa subunit.
  
 0.863
T45_02587
Hypothetical protein.
       0.752
T45_02588
Hypothetical protein.
       0.752
T45_07334
AAA domain.
 
 
 0.700
cobN
Aerobic cobaltochelatase subunit CobN.
  
 0.618
mlr_1
4-methylaminobutanoate oxidase; Belongs to the GcvT family.
     
  0.613
T45_04622
stearoyl-CoA 9-desaturase electron transfer.
   
 
  0.609
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
   
 
  0.609
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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