Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lacF_5Lactose transport system permease protein LacF. (321 aa)    
Predicted Functional Partners:
araN_2
Putative arabinose-binding protein precursor.
 
  0.997
araQ_6
L-arabinose transport system permease protein.
 
  0.982
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.950
lacG_2
Lactose transport system permease protein LacG.
 
  0.860
lacG_5
Lactose transport system permease protein LacG.
 
  0.857
lacG_1
Lactose transport system permease protein LacG.
 
  0.851
araQ_5
L-arabinose transport system permease protein.
 
  0.848
araQ_11
L-arabinose transport system permease protein.
 
  0.848
araQ_17
L-arabinose transport system permease protein.
 
  0.848
araQ_10
L-arabinose transport system permease protein.
 
  0.847
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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